IL_6W2S_068

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_068 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1962

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6W2S|1|A|U|1101
6W2S|1|A|G|1102
6W2S|1|A|C|1103
*
6W2S|1|A|G|1129
6W2S|1|A|G|1130
6W2S|1|A|G|1131

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain S

eS17

Chain b

eS26

Chain c

eS27