IL_6W2S_072

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6W2S|1|A|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_072 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.1577

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6W2S|1|A|G|1206
6W2S|1|A|G|1207
6W2S|1|A|A|1208
*
6W2S|1|A|U|1691
6W2S|1|A|U|1692

Current chains

Chain A

18S rRNA

Nearby chains

Chain 0

CrPV 5'-UTR IRES

Chain b

eS26