IL_6W2S_087

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGA*UCGG

Length

7 nucleotides

Bulged bases

6W2S|1|A|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_087 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2793

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6W2S|1|A|C|1412
6W2S|1|A|G|1413
6W2S|1|A|A|1414
*
6W2S|1|A|U|1426
6W2S|1|A|C|1427
6W2S|1|A|G|1428
6W2S|1|A|G|1429

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19