IL_6W2S_098

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUGG*CUA

Length

7 nucleotides

Bulged bases

6W2S|1|A|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_098 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3601

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6W2S|1|A|U|1720
6W2S|1|A|U|1721
6W2S|1|A|G|1722
6W2S|1|A|G|1723
*
6W2S|1|A|C|1811
6W2S|1|A|U|1812
6W2S|1|A|A|1813

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

uS12