IL_6W2S_107

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGUCUGAG*CAACACGUAUC

Length

20 nucleotides

Bulged bases

6W2S|1|0|C|442, 6W2S|1|0|C|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|0|G|374
6W2S|1|0|U|375
6W2S|1|0|G|376
6W2S|1|0|U|377
6W2S|1|0|C|378
6W2S|1|0|U|379
6W2S|1|0|G|380
6W2S|1|0|A|381
6W2S|1|0|G|382
*
6W2S|1|0|C|439
6W2S|1|0|A|440
6W2S|1|0|A|441
6W2S|1|0|C|442
6W2S|1|0|A|443
6W2S|1|0|C|444
6W2S|1|0|G|445
6W2S|1|0|U|446
6W2S|1|0|A|447
6W2S|1|0|U|448
6W2S|1|0|C|449

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain V

uS10

Chain h

RACK1