IL_6W2S_112

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6W2S|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_112 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3601

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6W2S|1|A|G|925
6W2S|1|A|A|926
*
6W2S|1|A|U|1015
6W2S|1|A|U|1016
6W2S|1|A|U|1017

Current chains

Chain A

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27