IL_6W2S_119
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 6W2S|1|A|U|1585, 6W2S|1|A|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6W2S|1|A|G|1541
6W2S|1|A|C|1542
6W2S|1|A|U|1543
6W2S|1|A|C|1544
6W2S|1|A|A|1545
6W2S|1|A|G|1546
6W2S|1|A|C|1547
6W2S|1|A|G|1548
6W2S|1|A|U|1549
6W2S|1|A|G|1550
*
6W2S|1|A|C|1582
6W2S|1|A|C|1583
6W2S|1|A|G|1584
6W2S|1|A|U|1585
6W2S|1|A|U|1586
6W2S|1|A|G|1587
6W2S|1|A|A|1588
6W2S|1|A|A|1589
6W2S|1|A|C|1590
6W2S|1|A|C|1591
6W2S|1|A|C|1592
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain G
- uS7
- Chain R
- uS9
- Chain U
- eS19
- Chain V
- uS10
- Chain a
- eS25
- Chain e
- eS29
Coloring options: