3D structure

PDB id
6W6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Activated-high-Mg2+
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
ACGCAG*UCAGGU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W6K_078 not in the Motif Atlas
Geometric match to IL_3LQX_002
Geometric discrepancy: 0.3865
The information below is about IL_3LQX_002
Detailed Annotation
tSH-tHW-tHS-cWW
Broad Annotation
No text annotation
Motif group
IL_76308.6
Basepair signature
cWW-tSH-tHW-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6W6K|1|A|A|579
6W6K|1|A|C|580
6W6K|1|A|G|581
6W6K|1|A|C|582
6W6K|1|A|A|583
6W6K|1|A|G|584
*
6W6K|1|A|U|757
6W6K|1|A|C|758
6W6K|1|A|A|759
6W6K|1|A|G|760
6W6K|1|A|G|761
6W6K|1|A|U|762

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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