3D structure

PDB id
6W7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Inactive-high-Mg2+ + carbon layer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W7M_020 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.1975
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

6W7M|1|A|U|409
6W7M|1|A|G|410
6W7M|1|A|A|411
6W7M|1|A|A|412
6W7M|1|A|G|413
6W7M|1|A|A|414
6W7M|1|A|A|415
6W7M|1|A|G|416
*
6W7M|1|A|U|427
6W7M|1|A|G|428
6W7M|1|A|U|429
6W7M|1|A|A|430
6W7M|1|A|A|431
6W7M|1|A|A|432
6W7M|1|A|G|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4

Coloring options:


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