3D structure

PDB id
6W7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Inactive-high-Mg2+ + carbon layer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGUGUAG*CGUAGAGAUC
Length
17 nucleotides
Bulged bases
6W7M|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W7M_035 not in the Motif Atlas
Geometric match to IL_8C3A_440
Geometric discrepancy: 0.397
The information below is about IL_8C3A_440
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_22252.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

6W7M|1|A|G|682
6W7M|1|A|G|683
6W7M|1|A|U|684
6W7M|1|A|G|685
6W7M|1|A|U|686
6W7M|1|A|A|687
6W7M|1|A|G|688
*
6W7M|1|A|C|699
6W7M|1|A|G|700
6W7M|1|A|U|701
6W7M|1|A|A|702
6W7M|1|A|G|703
6W7M|1|A|A|704
6W7M|1|A|G|705
6W7M|1|A|A|706
6W7M|1|A|U|707
6W7M|1|A|C|708

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11

Coloring options:


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