IL_6W7M_043

3D structure

PDB id

6W7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-high-Mg2+ + carbon layer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6W7M|1|A|U|1049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W7M_043 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.3347

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6W7M|1|A|G|1048
6W7M|1|A|U|1049
6W7M|1|A|G|1050
*
6W7M|1|A|C|1208
6W7M|1|A|C|1209

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14