IL_6WBR_001

3D structure

PDB id

6WBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6WBR|1|B|G|26
6WBR|1|B|G|27
6WBR|1|B|A|28
*
6WBR|1|B|U|41
6WBR|1|B|A|42
6WBR|1|B|C|43

Current chains

Chain B

RNA (94-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease, Csn1 family,CRISPR-associated endonuclease, Csn1 family