IL_6WD2_082

3D structure

PDB id

6WD2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGA*UUG

Length

7 nucleotides

Bulged bases

6WD2|1|1|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD2_082 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.2843

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6WD2|1|1|U|2202
6WD2|1|1|U|2203
6WD2|1|1|G|2204
6WD2|1|1|A|2205
*
6WD2|1|1|U|2219
6WD2|1|1|U|2220
6WD2|1|1|G|2221

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28