IL_6WD4_190

3D structure

PDB id

6WD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6WD4|1|1|U|276, 6WD4|1|1|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD4_190 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3168

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6WD4|1|1|C|274
6WD4|1|1|C|275
6WD4|1|1|U|276
6WD4|1|1|G|277
6WD4|1|1|A|278
6WD4|1|1|A|279
6WD4|1|1|U|280
6WD4|1|1|C|281
*
6WD4|1|1|G|359
6WD4|1|1|U|360
6WD4|1|1|G|361
6WD4|1|1|A|362
6WD4|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains