IL_6WD6_092

3D structure

PDB id

6WD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6WD6|1|1|A|2572, 6WD6|1|1|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD6_092 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.1275

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6WD6|1|1|C|2512
6WD6|1|1|A|2513
*
6WD6|1|1|U|2571
6WD6|1|1|A|2572
6WD6|1|1|C|2573
6WD6|1|1|G|2574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13