3D structure

PDB id
6WD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC
Length
35 nucleotides
Bulged bases
6WD6|1|1|U|2132, 6WD6|1|1|A|2170, 6WD6|1|1|A|2171, 6WD6|1|1|U|2172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WD6|1|1|G|2124
6WD6|1|1|G|2125
6WD6|1|1|A|2126
6WD6|1|1|G|2127
6WD6|1|1|G|2128
6WD6|1|1|C|2129
6WD6|1|1|U|2130
6WD6|1|1|U|2131
6WD6|1|1|U|2132
6WD6|1|1|G|2133
6WD6|1|1|A|2134
6WD6|1|1|A|2135
6WD6|1|1|G|2136
6WD6|1|1|U|2137
*
6WD6|1|1|A|2154
6WD6|1|1|U|2155
6WD6|1|1|G|2156
6WD6|1|1|G|2157
6WD6|1|1|A|2158
6WD6|1|1|G|2159
6WD6|1|1|C|2160
6WD6|1|1|C|2161
6WD6|1|1|G|2162
6WD6|1|1|A|2163
6WD6|1|1|C|2164
6WD6|1|1|C|2165
6WD6|1|1|U|2166
6WD6|1|1|U|2167
6WD6|1|1|G|2168
6WD6|1|1|A|2169
6WD6|1|1|A|2170
6WD6|1|1|A|2171
6WD6|1|1|U|2172
6WD6|1|1|A|2173
6WD6|1|1|C|2174

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain a
50S ribosomal protein L1

Coloring options:

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