3D structure

PDB id
6WD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD7_045 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.0898
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6WD7|1|1|A|1262
6WD7|1|1|U|1263
6WD7|1|1|A|1264
6WD7|1|1|A|1265
6WD7|1|1|G|1266
6WD7|1|1|U|1267
6WD7|1|1|A|1268
6WD7|1|1|A|1269
*
6WD7|1|1|U|2011
6WD7|1|1|G|2012
6WD7|1|1|A|2013
6WD7|1|1|A|2014
6WD7|1|1|A|2015
6WD7|1|1|U|2016
6WD7|1|1|U|2017

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain d
50S ribosomal protein L4
Chain s
50S ribosomal protein L22

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