3D structure

PDB id
6WD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
6WD7|1|3|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD7_132 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.1141
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6WD7|1|3|G|446
6WD7|1|3|G|447
6WD7|1|3|A|448
6WD7|1|3|G|449
6WD7|1|3|G|450
*
6WD7|1|3|C|483
6WD7|1|3|G|484
6WD7|1|3|U|485
6WD7|1|3|U|486
6WD7|1|3|A|487
6WD7|1|3|C|488

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain U
30S ribosomal protein S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5937 s