IL_6WD7_139

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD7_139 not in the Motif Atlas

Homologous match to IL_6CZR_137

Geometric discrepancy: 0.1627

The information below is about IL_6CZR_137

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6WD7|1|3|G|597
6WD7|1|3|U|598
*
6WD7|1|3|A|640
6WD7|1|3|U|641
6WD7|1|3|A|642
6WD7|1|3|C|643

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain V

30S ribosomal protein S17