IL_6WD7_149

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6WD7|1|3|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD7_149 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2437

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6WD7|1|3|G|922
6WD7|1|3|A|923
6WD7|1|3|C|924
*
6WD7|1|3|G|1392
6WD7|1|3|U|1393
6WD7|1|3|A|1394
6WD7|1|3|C|1395

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S5