IL_6WD7_180

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6WD7|1|1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD7_180 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.2789

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WD7|1|1|G|1087
6WD7|1|1|A|1088
6WD7|1|1|A|1089
6WD7|1|1|A|1090
6WD7|1|1|G|1091
*
6WD7|1|1|C|1100
6WD7|1|1|U|1101
6WD7|1|1|C|1102

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain i

50S ribosomal protein L11