IL_6WD9_131
3D structure
- PDB id
- 6WD9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 6WD9|1|3|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WD9_131 not in the Motif Atlas
- Geometric match to IL_5J7L_022
- Geometric discrepancy: 0.1277
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WD9|1|3|G|446
6WD9|1|3|G|447
6WD9|1|3|A|448
6WD9|1|3|G|449
6WD9|1|3|G|450
*
6WD9|1|3|C|483
6WD9|1|3|G|484
6WD9|1|3|U|485
6WD9|1|3|U|486
6WD9|1|3|A|487
6WD9|1|3|C|488
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
- Chain U
- 30S ribosomal protein S16
Coloring options: