3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDA_045 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.1077
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6WDA|1|1|A|1262
6WDA|1|1|U|1263
6WDA|1|1|A|1264
6WDA|1|1|A|1265
6WDA|1|1|G|1266
6WDA|1|1|U|1267
6WDA|1|1|A|1268
6WDA|1|1|A|1269
*
6WDA|1|1|U|2011
6WDA|1|1|G|2012
6WDA|1|1|A|2013
6WDA|1|1|A|2014
6WDA|1|1|A|2015
6WDA|1|1|U|2016
6WDA|1|1|U|2017

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain d
50S ribosomal protein L4
Chain s
50S ribosomal protein L22

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