IL_6WDA_063

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6WDA|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDA_063 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0979

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6WDA|1|1|C|1686
6WDA|1|1|G|1687
6WDA|1|1|U|1688
6WDA|1|1|A|1689
6WDA|1|1|A|1690
6WDA|1|1|C|1691
*
6WDA|1|1|G|1696
6WDA|1|1|G|1697
6WDA|1|1|A|1698
6WDA|1|1|G|1699
6WDA|1|1|A|1700
6WDA|1|1|A|1701
6WDA|1|1|G|1702

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2