IL_6WDA_128

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

6WDA|1|3|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDA_128 not in the Motif Atlas

Homologous match to IL_4LFB_016

Geometric discrepancy: 0.1475

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6WDA|1|3|U|375
6WDA|1|3|G|376
*
6WDA|1|3|U|387
6WDA|1|3|G|388
6WDA|1|3|A|389

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S16