IL_6WDA_133
3D structure
- PDB id
- 6WDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGCUAACU*AGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDA_133 not in the Motif Atlas
- Geometric match to IL_7A0S_011
- Geometric discrepancy: 0.223
- The information below is about IL_7A0S_011
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6WDA|1|3|C|504
6WDA|1|3|G|505
6WDA|1|3|G|506
6WDA|1|3|C|507
6WDA|1|3|U|508
6WDA|1|3|A|509
6WDA|1|3|A|510
6WDA|1|3|C|511
6WDA|1|3|U|512
*
6WDA|1|3|A|539
6WDA|1|3|G|540
6WDA|1|3|G|541
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
- Chain Q
- 30S ribosomal protein S12
Coloring options: