3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AUACAAAG*CAUAAAGU
Length
16 nucleotides
Bulged bases
6WDA|1|3|U|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WDA|1|3|A|1246
6WDA|1|3|U|1247
6WDA|1|3|A|1248
6WDA|1|3|C|1249
6WDA|1|3|A|1250
6WDA|1|3|A|1251
6WDA|1|3|A|1252
6WDA|1|3|G|1253
*
6WDA|1|3|C|1284
6WDA|1|3|A|1285
6WDA|1|3|U|1286
6WDA|1|3|A|1287
6WDA|1|3|A|1288
6WDA|1|3|A|1289
6WDA|1|3|G|1290
6WDA|1|3|U|1291

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S7
Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:

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