IL_6WDE_047

3D structure

PDB id

6WDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6WDE|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDE_047 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1753

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6WDE|1|1|C|1319
6WDE|1|1|C|1320
6WDE|1|1|A|1321
6WDE|1|1|A|1322
6WDE|1|1|C|1323
*
6WDE|1|1|G|1331
6WDE|1|1|G|1332
6WDE|1|1|G|1333

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23