3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6WDF|1|1|A|1127, 6WDF|1|1|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDF_037 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.105
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6WDF|1|1|G|1024
6WDF|1|1|G|1025
6WDF|1|1|G|1026
6WDF|1|1|A|1027
6WDF|1|1|A|1028
6WDF|1|1|A|1029
6WDF|1|1|C|1030
*
6WDF|1|1|G|1124
6WDF|1|1|G|1125
6WDF|1|1|A|1126
6WDF|1|1|A|1127
6WDF|1|1|G|1128
6WDF|1|1|A|1129
6WDF|1|1|U|1130
6WDF|1|1|G|1131
6WDF|1|1|U|1132
6WDF|1|1|A|1133
6WDF|1|1|A|1134
6WDF|1|1|C|1135
6WDF|1|1|G|1136
6WDF|1|1|G|1137
6WDF|1|1|G|1138
6WDF|1|1|G|1139
6WDF|1|1|C|1140

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L36
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain m
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2095 s