IL_6WDF_056

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDF_056 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3819

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6WDF|1|1|G|1473
6WDF|1|1|U|1474
6WDF|1|1|G|1475
6WDF|1|1|U|1476
6WDF|1|1|A|1477
6WDF|1|1|G|1478
*
6WDF|1|1|U|1513
6WDF|1|1|G|1514
6WDF|1|1|A|1515
6WDF|1|1|G|1516
6WDF|1|1|G|1517
6WDF|1|1|C|1518

Current chains

Chain 1

23S ribosomal RNA

Nearby chains