3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
6WDF|1|3|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDF_132 not in the Motif Atlas
Homologous match to IL_5J7L_022
Geometric discrepancy: 0.1524
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6WDF|1|3|G|446
6WDF|1|3|G|447
6WDF|1|3|A|448
6WDF|1|3|G|449
6WDF|1|3|G|450
*
6WDF|1|3|C|483
6WDF|1|3|G|484
6WDF|1|3|U|485
6WDF|1|3|U|486
6WDF|1|3|A|487
6WDF|1|3|C|488

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain U
30S ribosomal protein S16

Coloring options:


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