IL_6WDF_152

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDF_152 not in the Motif Atlas

Homologous match to IL_6CZR_150

Geometric discrepancy: 0.1792

The information below is about IL_6CZR_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDF|1|3|G|953
6WDF|1|3|G|954
*
6WDF|1|3|C|1226
6WDF|1|3|A|1227
6WDF|1|3|C|1228

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19