3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDF_169 not in the Motif Atlas
Geometric match to IL_4KNQ_004
Geometric discrepancy: 0.1516
The information below is about IL_4KNQ_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_44258.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
259

Unit IDs

6WDF|1|3|G|1405
6WDF|1|3|U|1406
6WDF|1|3|C|1407
*
6WDF|1|3|G|1494
6WDF|1|3|U|1495
6WDF|1|3|C|1496

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 4
mRNA
Chain 7
Transfer RNA; tRNA
Chain Q
30S ribosomal protein S12

Coloring options:


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