IL_6WDG_006

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDG_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0875

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6WDG|1|1|G|188
6WDG|1|1|G|189
6WDG|1|1|A|190
6WDG|1|1|A|191
6WDG|1|1|C|192
6WDG|1|1|U|193
6WDG|1|1|G|194
*
6WDG|1|1|C|201
6WDG|1|1|U|202
6WDG|1|1|A|203
6WDG|1|1|A|204
6WDG|1|1|G|205
6WDG|1|1|U|206
6WDG|1|1|A|207
6WDG|1|1|C|208

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain l

50S ribosomal protein L15

Chain x

50S ribosomal protein L28