IL_6WDG_037

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

6WDG|1|1|A|1127, 6WDG|1|1|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDG_037 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.108

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

6WDG|1|1|G|1024
6WDG|1|1|G|1025
6WDG|1|1|G|1026
6WDG|1|1|A|1027
6WDG|1|1|A|1028
6WDG|1|1|A|1029
6WDG|1|1|C|1030
*
6WDG|1|1|G|1124
6WDG|1|1|G|1125
6WDG|1|1|A|1126
6WDG|1|1|A|1127
6WDG|1|1|G|1128
6WDG|1|1|A|1129
6WDG|1|1|U|1130
6WDG|1|1|G|1131
6WDG|1|1|U|1132
6WDG|1|1|A|1133
6WDG|1|1|A|1134
6WDG|1|1|C|1135
6WDG|1|1|G|1136
6WDG|1|1|G|1137
6WDG|1|1|G|1138
6WDG|1|1|G|1139
6WDG|1|1|C|1140

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L36

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13

Chain m

50S ribosomal protein L16