IL_6WDG_167

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDG_167 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1985

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WDG|1|3|C|1303
6WDG|1|3|G|1304
6WDG|1|3|G|1305
6WDG|1|3|A|1306
6WDG|1|3|U|1307
6WDG|1|3|U|1308
*
6WDG|1|3|A|1329
6WDG|1|3|U|1330
6WDG|1|3|G|1331
6WDG|1|3|A|1332
6WDG|1|3|A|1333
6WDG|1|3|G|1334

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19