IL_6WDG_185

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUGUGUAGGAUAG*CCUUUA

Length

21 nucleotides

Bulged bases

6WDG|1|1|U|2111, 6WDG|1|1|G|2112, 6WDG|1|1|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDG|1|1|U|2106
6WDG|1|1|G|2107
6WDG|1|1|A|2108
6WDG|1|1|U|2109
6WDG|1|1|G|2110
6WDG|1|1|U|2111
6WDG|1|1|G|2112
6WDG|1|1|U|2113
6WDG|1|1|A|2114
6WDG|1|1|G|2115
6WDG|1|1|G|2116
6WDG|1|1|A|2117
6WDG|1|1|U|2118
6WDG|1|1|A|2119
6WDG|1|1|G|2120
*
6WDG|1|1|C|2178
6WDG|1|1|C|2179
6WDG|1|1|U|2180
6WDG|1|1|U|2181
6WDG|1|1|U|2182
6WDG|1|1|A|2183

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain L

30S ribosomal protein S7

Chain a

50S ribosomal protein L1