IL_6WDJ_004
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 6WDJ|1|1|U|100, 6WDJ|1|1|U|102
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDJ_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.4685
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
6WDJ|1|1|G|81
6WDJ|1|1|U|82
6WDJ|1|1|A|83
6WDJ|1|1|A|84
6WDJ|1|1|G|85
*
6WDJ|1|1|C|97
6WDJ|1|1|G|98
6WDJ|1|1|U|99
6WDJ|1|1|U|100
6WDJ|1|1|A|101
6WDJ|1|1|U|102
6WDJ|1|1|A|103
6WDJ|1|1|A|104
6WDJ|1|1|C|105
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain u
- 50S ribosomal protein L24
- Chain y
- 50S ribosomal protein L29
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