IL_6WDJ_065

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6WDJ|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDJ_065 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1829

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WDJ|1|1|U|1712
6WDJ|1|1|A|1713
6WDJ|1|1|U|1714
6WDJ|1|1|G|1715
6WDJ|1|1|U|1716
6WDJ|1|1|A|1717
6WDJ|1|1|G|1718
*
6WDJ|1|1|U|1742
6WDJ|1|1|G|1743
6WDJ|1|1|A|1744
6WDJ|1|1|A|1745
6WDJ|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains