IL_6WDJ_079
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAGC*GUGGG
- Length
- 9 nucleotides
- Bulged bases
- 6WDJ|1|1|G|2238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDJ_079 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.2972
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6WDJ|1|1|U|2081
6WDJ|1|1|A|2082
6WDJ|1|1|G|2083
6WDJ|1|1|C|2084
*
6WDJ|1|1|G|2235
6WDJ|1|1|U|2236
6WDJ|1|1|G|2237
6WDJ|1|1|G|2238
6WDJ|1|1|G|2239
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain b
- 50S ribosomal protein L2
- Chain x
- 50S ribosomal protein L28
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