IL_6WDJ_097

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDJ_097 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.1351

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6WDJ|1|1|C|2652
6WDJ|1|1|U|2653
6WDJ|1|1|A|2654
6WDJ|1|1|G|2655
6WDJ|1|1|U|2656
6WDJ|1|1|A|2657
6WDJ|1|1|C|2658
*
6WDJ|1|1|G|2663
6WDJ|1|1|G|2664
6WDJ|1|1|A|2665
6WDJ|1|1|C|2666
6WDJ|1|1|C|2667
6WDJ|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6