IL_6WDJ_156
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGCAU*AUGG
- Length
- 10 nucleotides
- Bulged bases
- 6WDJ|1|3|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDJ_156 not in the Motif Atlas
- Geometric match to IL_5C5W_003
- Geometric discrepancy: 0.3387
- The information below is about IL_5C5W_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 52
Unit IDs
6WDJ|1|3|C|1051
6WDJ|1|3|U|1052
6WDJ|1|3|G|1053
6WDJ|1|3|C|1054
6WDJ|1|3|A|1055
6WDJ|1|3|U|1056
*
6WDJ|1|3|A|1204
6WDJ|1|3|U|1205
6WDJ|1|3|G|1206
6WDJ|1|3|G|1207
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA
- Chain 7
- Transfer RNA; tRNA
- Chain H
- 30S ribosomal protein S3
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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