IL_6WDJ_190

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6WDJ|1|1|U|276, 6WDJ|1|1|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDJ_190 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3083

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6WDJ|1|1|C|274
6WDJ|1|1|C|275
6WDJ|1|1|U|276
6WDJ|1|1|G|277
6WDJ|1|1|A|278
6WDJ|1|1|A|279
6WDJ|1|1|U|280
6WDJ|1|1|C|281
*
6WDJ|1|1|G|359
6WDJ|1|1|U|360
6WDJ|1|1|G|361
6WDJ|1|1|A|362
6WDJ|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains