IL_6WDK_192

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6WDK|1|1|U|276, 6WDK|1|1|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDK_192 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3114

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6WDK|1|1|C|274
6WDK|1|1|C|275
6WDK|1|1|U|276
6WDK|1|1|G|277
6WDK|1|1|A|278
6WDK|1|1|A|279
6WDK|1|1|U|280
6WDK|1|1|C|281
*
6WDK|1|1|G|359
6WDK|1|1|U|360
6WDK|1|1|G|361
6WDK|1|1|A|362
6WDK|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains