IL_6WDM_040

3D structure

PDB id

6WDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

6WDM|1|1|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDM|1|1|C|1043
6WDM|1|1|C|1044
6WDM|1|1|C|1045
6WDM|1|1|A|1046
6WDM|1|1|G|1047
6WDM|1|1|A|1048
6WDM|1|1|C|1049
6WDM|1|1|A|1050
6WDM|1|1|G|1051
6WDM|1|1|C|1052
*
6WDM|1|1|G|1107
6WDM|1|1|U|1108
6WDM|1|1|C|1109
6WDM|1|1|G|1110
6WDM|1|1|A|1111
6WDM|1|1|G|1112

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6

Chain h

50S ribosomal protein L10