IL_6WDM_100

3D structure

PDB id

6WDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

6WDM|1|1|C|2712, 6WDM|1|1|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDM_100 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.1285

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6WDM|1|1|U|2695
6WDM|1|1|U|2696
*
6WDM|1|1|A|2711
6WDM|1|1|C|2712
6WDM|1|1|U|2713
6WDM|1|1|G|2714

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19