IL_6WDR_013
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAC*GAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDR_013 not in the Motif Atlas
- Geometric match to IL_4WF9_087
- Geometric discrepancy: 0.2063
- The information below is about IL_4WF9_087
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
6WDR|1|2|C|449
6WDR|1|2|G|450
6WDR|1|2|A|451
6WDR|1|2|C|452
*
6WDR|1|2|G|459
6WDR|1|2|A|460
6WDR|1|2|A|461
6WDR|1|2|G|462
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S8-A
Coloring options: