IL_6WDR_014
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 6WDR|1|2|U|523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDR_014 not in the Motif Atlas
- Geometric match to IL_4V88_397
- Geometric discrepancy: 0.1658
- The information below is about IL_4V88_397
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6WDR|1|2|G|467
6WDR|1|2|U|468
6WDR|1|2|A|469
*
6WDR|1|2|U|522
6WDR|1|2|U|523
6WDR|1|2|U|524
6WDR|1|2|U|525
6WDR|1|2|C|526
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain I
- 40S ribosomal protein S8-A
Coloring options: