IL_6WDR_016

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

6WDR|1|2|A|480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|A|476
6WDR|1|2|G|477
6WDR|1|2|A|478
6WDR|1|2|U|479
6WDR|1|2|A|480
6WDR|1|2|A|481
6WDR|1|2|A|482
6WDR|1|2|A|483
6WDR|1|2|A|484
6WDR|1|2|A|485
6WDR|1|2|U|486
6WDR|1|2|C|487
6WDR|1|2|A|488
6WDR|1|2|A|489
6WDR|1|2|U|490
6WDR|1|2|G|491
6WDR|1|2|U|492
6WDR|1|2|C|493
6WDR|1|2|U|494
6WDR|1|2|U|495
6WDR|1|2|C|496
6WDR|1|2|G|497
6WDR|1|2|G|498
6WDR|1|2|A|499
6WDR|1|2|C|500
6WDR|1|2|U|501
6WDR|1|2|C|502
6WDR|1|2|U|503
6WDR|1|2|U|504
6WDR|1|2|U|505
6WDR|1|2|G|506
*
6WDR|1|2|C|513
6WDR|1|2|A|514
6WDR|1|2|U|515

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A