IL_6WDR_025
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- 6WDR|1|2|U|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDR_025 not in the Motif Atlas
- Homologous match to IL_4V88_407
- Geometric discrepancy: 0.1589
- The information below is about IL_4V88_407
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6WDR|1|2|U|702
6WDR|1|2|U|703
6WDR|1|2|A|704
*
6WDR|1|2|U|726
6WDR|1|2|A|727
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain J
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S24-A
- Chain k
- Ribosome biogenesis protein TSR1
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